AMBER Archive (2009)Subject: Re: [AMBER] How to visualize PCA results without IED?
From: Shozeb Haider (shozeb.haider_at_pharmacy.ac.uk)
Date: Tue Jul 28 2009 - 06:02:22 CDT
Hi Cat,
You can use a software called PCAZIP. Its free to download from the CCPB
website (http://www.ccpb.ac.uk/software/) and can be used on your
machine. Its very effective for visualisation of PCA results.
We have used it in the article :
Molecular dynamics and principal components analysis of human telomeric
quadruplex multimers.
<http://www.ncbi.nlm.nih.gov/pubmed/18375510?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum>
Haider S, Parkinson GN, Neidle S.
Biophys J. 2008 Jul;95(1):296-311.
Best wishes
Shozeb
_______________________________________________
AMBER mailing list
AMBER_at_ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
|