AMBER Archive (2009)

Subject: [AMBER] How to split mdcrd files

From: shamoon siddiqui (shamoonsiddiqui_at_gmail.com)
Date: Sun Nov 15 2009 - 11:22:52 CST

Dear All,
I am trying to do hydrogen bond analysis for my protein dna complex, but the
problem is that my system is very big and my simulation is also of 20 ns.
That is why ptraj is giving segmentation error, i think because my mdcrd
file is too much heavy and when i did H-bond analysis with small mdcrd file,
then suceed. So could anyone please tell me how to split mdcrd file into
several small mdcrd files, i think it is possible with ptraj, but i don't
know how to do. So please let me know in detail 

-- 
With best regards

Dr. Shamoon Ahmad Siddiqui
DBT Postdoctoral Fellow
Molecular Biophysics Unit
Indian Institute of Science
Bangalore-560012, India
_______________________________________________
AMBER mailing list
AMBER_at_ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber